Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs11253499 | chr10:944090 | A/C | 3.68E-5 | 405 | 14.75 | 17.73 | 12.17 | KM Plot |
| LGG | rs112587750 | chr9:94135226 | A/C | 1.51E-5 | 399 | 14.93 | 19.2 | 8 | KM Plot |
| LGG | rs112634521 | chr4:47587665 | A/G | 1.8E-5 | 388 | 14.57 | 16.53 | 13.87 | KM Plot |
| LGG | rs112635326 | chr4:47629117 | A/G | 2.87E-6 | 405 | 14.57 | 16.47 | 13.87 | KM Plot |
| LGG | rs112686507 | chr17:48518673 | A/G | 1.77E-5 | 406 | 15.23 | 16.52 | 14.12 | KM Plot |
| LGG | rs112703132 | chr12:64045541 | A/AG | 4.96E-13 | 405 | 14.8 | 19.5 | 5.4 | KM Plot |
| LGG | rs112729442 | chr17:48512272 | C/T | 1.76E-5 | 406 | 15.17 | 17.67 | 14.12 | KM Plot |
| LGG | rs112787302 | chr7:55973920 | A/G | 1.54E-10 | 406 | 15.25 | 15.93 | 7.8 | KM Plot |
| LGG | rs112828746 | chr17:48509329 | C/T | 1.81E-5 | 405 | 15.23 | 17.67 | 14.12 | KM Plot |
| LGG | rs112886320 | chr7:55932373 | T/C | 7.14E-5 | 404 | 15.25 | 15.65 | 5.88 | KM Plot |
| LGG | rs112918113 | chr7:56026616 | G/T | 1.62E-10 | 405 | 15.3 | 16.23 | 7.8 | KM Plot |
| LGG | rs112925879 | chr9:126948574 | T/G | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs112947957 | chr5:155960990 | ACTTTT/A | 5.06E-6 | 407 | 15.33 | 15.17 | 15.37 | KM Plot |
| LGG | rs112955454 | chr7:55893430 | C/A | 0 | 404 | 15.18 | 16.23 | 3.77 | KM Plot |
| LGG | rs112986863 | chr22:42821698 | C/T | 6.28E-8 | 402 | 15.32 | 16.23 | 4.4 | KM Plot |